athena.dataset.datasets module

Summary

Functions:

imc	Pre-processed zurich cohort IMC dataset from *Jackson, H.W., Fischer, J.R., Zanotelli, V.R.T.
imc_quickstart	Pre-processed samples from the cohort IMC dataset from *Jackson, H.W., Fischer, J.R., Zanotelli, V.R.T.
imc_sample	Pre-processed samples from the cohort IMC dataset from *Jackson, H.W., Fischer, J.R., Zanotelli, V.R.T.
mibi	Processed data from A Structured Tumor-Immune Microenvironment in Triple Negative Breast Cancer Revealed by Multiplexed Ion Beam Imaging. Cell.

Reference

imc(force_download=False)

Pre-processed zurich cohort IMC dataset from Jackson, H.W., Fischer, J.R., Zanotelli, V.R.T. et al. The single-cell pathology landscape of breast cancer. Nature

imc_sample(force_download=False)

Pre-processed samples from the cohort IMC dataset from Jackson, H.W., Fischer, J.R., Zanotelli, V.R.T. et al. The single-cell pathology landscape of breast cancer. Nature

imc_quickstart(force_download=False)

Pre-processed samples from the cohort IMC dataset from Jackson, H.W., Fischer, J.R., Zanotelli, V.R.T. et al. The single-cell pathology landscape of breast cancer. Nature

mibi()

Processed data from A Structured Tumor-Immune Microenvironment in Triple Negative Breast Cancer Revealed by Multiplexed Ion Beam Imaging. Cell. Normalised expression values of segmented cells and cell masks from here and tiff stacks from here