scQUEST.dataset.datasets module

Summary

Functions:

aml_and_healthy	AML dataset with cells from healthy and AML patients.
aml_annotated_celltypes	AML dataset with cells from healthy donors to show case classification.
breastCancerAtlas	Flow cytometry dataset with annotated epithelial cells in ['celltype', 'celltype_class'] of ad.obs.
breastCancerAtlasRaw	Raw flow cytometry dataset.

Reference

breastCancerAtlas(force_load=False)

Flow cytometry dataset with annotated epithelial cells in [‘celltype’, ‘celltype_class’] of ad.obs. Locally stored at ~/.scQUEST

breastCancerAtlasRaw(force_load=False)

Raw flow cytometry dataset. Locally stored at ~/.scQUEST

aml_and_healthy(force_load=False)

AML dataset with cells from healthy and AML patients. Locally stored at ~/.scQUEST

aml_annotated_celltypes(force_load=False)

AML dataset with cells from healthy donors to show case classification. Locally stored at ~/.scQUEST